genome.fa.s7608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007608.1 Corchorus capsularis cultivar CVL-1 contig07629, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70473

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13500--13534	2	18.0	2	88	5	54	45	0	2	51	1.16
13502--13534	17	1.9	17	93	0	57	45	0	3	51	1.16
14787--14822	18	2.0	18	94	0	63	25	0	19	55	1.43
16890--16936	2	25.5	2	83	16	66	46	0	0	53	1.00
16890--16935	23	2.0	24	95	4	85	45	0	0	54	0.99
17827--17929	53	1.9	54	88	2	154	26	35	19	18	1.95
20425--20552	38	3.4	37	80	7	150	27	19	37	15	1.92
22554--22704	49	3.1	49	92	1	241	35	14	21	28	1.93
25464--25591	37	3.4	37	73	12	118	30	20	34	14	1.93
32205--32307	31	3.4	30	70	24	99	21	21	21	35	1.96
32236--32336	29	3.4	27	72	17	78	24	20	20	33	1.97
32204--32366	60	2.7	60	91	1	256	24	20	20	34	1.96
32401--32648	36	6.9	36	88	4	358	28	16	10	45	1.80
32401--32648	107	2.3	108	90	4	385	28	16	10	45	1.80
33081--33111	2	15.0	2	93	6	53	48	3	0	48	1.17
42502--42545	3	14.3	3	95	4	79	34	0	0	65	0.93
42942--43858	446	2.1	447	86	3	1291	26	13	18	42	1.87
45701--45751	14	3.6	14	82	15	68	31	11	1	54	1.47
50102--50129	2	14.0	2	100	0	56	0	50	0	50	1.00
54157--54410	66	3.9	66	74	9	198	27	22	33	17	1.96
54158--54453	33	9.0	33	77	3	175	28	22	32	16	1.96
56436--56488	24	2.3	23	80	9	63	35	13	7	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61094--62103	438	2.3	434	83	4	1210	43	12	13	30	1.82
62420--62444	2	12.5	2	100	0	50	48	0	0	52	1.00
68391--68423	11	3.0	11	83	16	50	36	9	18	36	1.82

Tables:   1

The End!