Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000761.1 Corchorus capsularis cultivar CVL-1 contig00761, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:198 original size:13 final size:13

Alignment explanation


    Indices: 180--204  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        170 CATTATTGAT

                         
        180 AAAAAAGTTACTA
          1 AAAAAAGTTACTA

                        
        193 AAAAAAGTTACT
          1 AAAAAAGTTACT

        205 TATTTCTTTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24


Consensus pattern (13 bp):   
AAAAAAGTTACTA

Found at i:1426 original size:19 final size:19

Alignment explanation


    Indices: 1402--1453  Score: 59
    Period size: 21  Copynumber: 2.6  Consensus size: 19

       1392 AAAGCTGAAG

                          *    
       1402 TTATAACCTTAATTTTTTT
          1 TTATAACCTTAATTATTTT

                         *       
       1421 TTATAACCTCTTAGTTATTTT
          1 TTATAA-C-CTTAATTATTTT

                        
       1442 TTAGTAACCTTA
          1 TTA-TAACCTTA

       1454 TTTAGATGTG


Statistics
Matches: 28,  Mismatches: 2, Indels: 5
        0.80            0.06        0.14

Matches are distributed among these distances:
  19    6  0.21
  20    5  0.18
  21   14  0.50
  22    3  0.11

ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56


Consensus pattern (19 bp):   
TTATAACCTTAATTATTTT
Done.