Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007617.1 Corchorus capsularis cultivar CVL-1 contig07638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35969

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
532--567
19
1.9
18
88
5
54
33
22
2
41
1.68
11372--11418
18
2.6
18
80
6
51
4
53
2
40
1.32
11373--11420
19
2.7
18
80
6
53
4
54
2
39
1.32
13145--13201
27
2.2
25
77
14
62
21
15
12
50
1.76
14669--14711
2
21.5
2
90
0
68
44
0
4
51
1.22
19948--20018
35
2.0
35
100
0
142
30
19
29
19
1.97
25744--25816
24
3.0
24
87
0
101
15
27
23
34
1.94
31100--31126
1
27.0
1
100
0
54
100
0
0
0
0.00
35581--35624
21
2.1
21
87
8
63
18
34
9
38
1.82
35870--35958
33
2.7
33
79
5
92
13
34
39
12
1.82

Tables:   1

The End!