Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007618.1 Corchorus capsularis cultivar CVL-1 contig07639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70652

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8023--8056
16
2.2
16
89
5
52
58
11
2
26
1.47
9338--9373
19
1.9
18
88
5
54
33
22
2
41
1.68
9536--9574
20
1.9
21
84
5
53
56
2
20
20
1.54
12877--12913
19
2.0
18
89
5
56
40
2
21
35
1.68
18423--18458
19
1.9
18
88
5
54
41
2
22
33
1.68
34776--35055
36
7.8
36
84
6
347
33
20
8
37
1.83
38977--39135
36
4.4
36
75
7
153
36
30
14
18
1.91
39178--39219
8
5.2
8
77
11
50
47
4
21
26
1.70
39168--39217
24
2.0
26
88
7
77
44
6
22
28
1.76
39256--39311
29
1.9
29
88
0
85
39
23
16
21
1.92
39261--39324
29
2.2
29
85
0
83
35
26
17
20
1.94
42514--42551
21
1.9
20
89
10
60
36
5
36
21
1.76
44997--45021
10
2.5
10
100
0
50
48
20
8
24
1.76
45928--45961
12
2.7
13
90
4
52
20
11
8
58
1.59
45958--45991
6
5.5
6
93
6
59
32
0
14
52
1.42
54678--54715
11
3.5
11
85
10
51
57
2
0
39
1.12
57316--57354
18
2.1
19
86
13
55
10
17
35
35
1.84
60115--61051
438
2.1
433
81
5
1091
42
12
14
31
1.82
64919--64958
19
2.1
19
100
0
80
62
20
0
17
1.33
65281--65306
3
8.7
3
100
0
52
0
30
0
69
0.89
65465--65722
107
2.5
105
89
3
378
39
8
9
42
1.67
66954--66997
23
1.9
23
90
0
70
45
38
4
11
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67513--67676
75
2.2
75
78
6
172
39
15
14
31
1.87

Tables:   1

The End!