genome.fa.s7620.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007620.1 Corchorus capsularis cultivar CVL-1 contig07641, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190236

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999--1057	28	2.1	28	96	0	109	18	22	20	38	1.93
1041--1181	50	2.8	50	89	0	219	23	24	14	37	1.92
2266--2300	11	3.5	10	88	11	54	0	17	0	82	0.66
13812--13930	45	2.7	44	89	6	179	32	15	7	44	1.74
20667--20731	20	3.4	20	72	10	64	44	3	10	41	1.55
20767--20842	35	2.2	35	82	0	98	31	22	7	38	1.83
25581--25631	25	2.0	27	84	7	70	64	7	7	19	1.44
26352--26386	14	2.4	15	90	4	54	62	0	25	11	1.28
33242--33292	25	2.0	27	88	7	79	62	9	7	19	1.50
34034--34068	14	2.4	15	90	4	54	62	0	25	11	1.28
37539--37603	33	2.0	33	96	0	121	18	9	38	33	1.83
40164--40199	19	1.9	18	88	5	54	41	2	22	33	1.68
41478--41514	15	2.2	17	81	18	51	24	5	8	62	1.44
50056--50091	19	1.9	18	88	5	54	41	2	22	33	1.68
57784--57815	6	5.5	6	96	3	57	31	0	12	56	1.37
67149--67191	20	2.2	20	91	4	70	25	16	30	27	1.97
67341--67373	17	1.9	17	100	0	66	27	6	36	30	1.81
67803--68088	156	1.8	156	82	4	371	35	19	15	29	1.93
69492--69516	13	1.9	13	100	0	50	24	28	8	40	1.83
70995--71030	3	12.0	3	100	0	72	33	0	0	66	0.92
76632--76678	24	2.1	22	84	11	60	8	25	8	57	1.57
85229--85406	59	3.0	59	89	0	293	25	5	16	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85965--86022	27	2.1	27	87	0	80	31	34	1	32	1.68
87267--87333	21	3.2	21	67	0	62	29	11	23	34	1.91
88765--89238	235	2.0	235	95	0	851	35	23	16	25	1.95
91563--91597	16	2.2	16	94	0	61	20	17	8	54	1.68
91626--91681	15	3.8	15	70	13	53	17	21	3	57	1.55
91660--91969	21	14.6	21	73	14	199	18	20	6	55	1.64
91580--91853	43	6.2	42	72	18	159	17	20	6	55	1.63
91663--91924	86	3.1	83	79	11	230	17	20	6	55	1.64
92246--92720	55	8.7	55	88	0	682	24	18	8	49	1.74
92945--93012	36	1.9	35	85	5	93	23	20	10	45	1.81
96542--96591	25	2.0	25	84	11	66	50	14	12	24	1.76
98904--98972	17	4.2	17	74	7	70	14	8	37	39	1.77
98922--99030	32	3.4	32	87	3	157	15	10	35	38	1.81
99163--99201	20	2.0	20	85	10	53	35	5	5	53	1.45
99221--99266	16	2.9	16	90	0	65	2	8	36	52	1.45
109487--109577	27	3.4	27	83	3	121	45	15	8	30	1.77
109487--109575	26	3.3	26	82	4	106	44	15	7	31	1.75
109689--109747	21	2.8	21	92	0	91	38	18	23	18	1.93
109793--109822	15	1.9	16	93	6	53	33	0	16	50	1.46
115840--115943	52	2.0	52	94	0	181	23	25	24	26	2.00
119144--119180	18	2.1	17	90	5	56	37	0	8	54	1.30
129162--129222	28	2.2	27	82	8	70	60	11	4	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132580--132632	21	2.5	21	77	17	56	13	24	49	13	1.77
135840--135950	42	2.7	41	77	14	104	54	3	9	33	1.49
135856--135949	42	2.2	41	81	10	109	50	4	10	35	1.57
135935--135998	25	2.7	23	86	9	92	32	12	6	48	1.66
136282--136342	28	2.2	27	82	8	70	60	11	4	22	1.50
141365--141408	2	22.0	2	85	0	61	47	2	4	45	1.35
143387--143467	32	2.5	32	78	4	83	37	22	7	33	1.82
143601--143635	2	17.5	2	100	0	70	48	0	0	51	1.00
144274--144304	11	2.9	11	95	4	55	45	0	0	54	0.99
144707--144786	29	2.7	30	80	5	90	26	15	11	47	1.78
144919--144948	15	1.9	16	93	6	53	46	40	13	0	1.43
145017--145139	16	7.6	17	74	10	107	51	30	13	5	1.63
145018--145139	32	3.8	32	91	0	199	51	30	12	5	1.62
146614--146682	33	2.1	33	94	0	120	15	30	4	49	1.64
147542--147590	21	2.3	21	85	0	62	30	28	30	10	1.90
152755--152803	21	2.3	21	79	6	55	12	38	26	22	1.89
156057--156105	21	2.3	21	85	0	62	30	28	30	10	1.90
158098--158152	24	2.3	25	81	9	69	10	12	41	34	1.78
163762--163795	16	2.2	16	89	5	52	32	0	5	61	1.20
165411--165436	8	3.2	8	100	0	52	38	0	23	38	1.55
170641--170665	13	1.9	13	100	0	50	16	0	8	76	1.02
172760--172804	14	3.1	14	75	12	54	53	2	8	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172759--172811	16	3.4	16	76	7	65	49	1	7	41	1.42
172763--172813	15	3.4	15	75	15	52	49	1	9	39	1.47
175273--175306	16	2.2	16	89	5	52	29	0	8	61	1.26
175581--175641	32	1.9	32	93	0	104	31	18	16	34	1.93

Tables:   1

The End!