genome.fa.s7624.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007624.1 Corchorus capsularis cultivar CVL-1 contig07645, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17361

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1434--1533	30	3.3	30	80	8	112	10	28	37	25	1.88
4460--4521	21	2.9	21	79	11	72	58	6	19	16	1.59
4517--4617	34	3.0	33	88	8	143	56	1	22	18	1.52
4544--4605	20	3.4	20	66	25	55	58	1	24	16	1.47
4598--4631	12	2.6	13	90	9	52	55	2	23	17	1.55
4562--4665	46	2.2	46	91	3	163	53	1	25	18	1.54
4610--4715	34	3.1	34	86	5	162	53	1	26	17	1.54
4562--4677	46	2.5	45	86	8	128	55	1	25	17	1.52
4592--4715	7	18.6	7	68	18	77	54	1	26	17	1.53
4748--4825	22	3.5	22	74	12	70	57	5	20	16	1.58
4756--4817	21	2.9	21	79	11	72	58	6	19	16	1.59
4813--4913	34	3.0	33	90	8	152	56	1	23	17	1.51
4840--4901	20	3.4	20	66	25	55	58	1	24	16	1.47
4888--4995	7	16.0	7	68	18	68	52	2	26	17	1.58
4894--4927	12	2.6	13	90	9	52	55	2	23	17	1.55
4827--4995	80	2.1	81	91	2	268	53	2	26	17	1.58
4858--4961	46	2.2	46	91	3	163	53	2	25	17	1.57
4906--5029	34	3.6	35	87	4	171	52	3	25	19	1.61
4419--4996	296	1.9	297	98	0	1122	50	6	23	19	1.69
4984--5091	56	1.9	56	81	3	128	51	4	20	23	1.65
7197--7303	33	3.2	33	89	0	169	33	8	17	40	1.80
9282--9322	21	2.1	18	86	13	55	36	12	26	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11118--11178	30	2.0	30	96	0	113	18	27	19	34	1.95
11118--11197	30	2.7	30	90	0	106	16	22	22	38	1.92
12341--12399	23	2.6	23	100	0	118	11	22	44	22	1.85
12390--12496	33	3.3	31	84	5	106	9	28	39	23	1.85

Tables:   1

The End!