Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007629.1 Corchorus capsularis cultivar CVL-1 contig07650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6598
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:6026 original size:13 final size:13

Alignment explanation


    Indices: 6010--6036  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       6000 TCTAAAACAG

                         
       6010 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

                         
       6023 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

             
       6036 A
          1 A

       6037 CAATAATTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22


Consensus pattern (13 bp):   
ATTAATAAAGCAA
Done.