Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007636.1 Corchorus capsularis cultivar CVL-1 contig07657, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46631

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
147--2992
336
8.5
330
79
7
2658
34
13
15
36
1.87
1591--1618
2
14.0
2
100
0
56
50
0
0
50
1.00
8443--8502
3
20.0
3
89
0
93
0
0
61
38
0.96
22109--22133
1
25.0
1
100
0
50
100
0
0
0
0.00
28463--28532
36
1.9
36
91
0
113
50
20
12
17
1.78
30928--30954
11
2.5
11
100
0
54
14
18
37
29
1.91
33521--33600
29
2.7
29
84
1
97
18
31
15
35
1.92
33613--33692
29
2.7
30
82
3
108
33
15
32
18
1.92
34166--34205
20
2.0
21
85
5
55
22
15
22
40
1.91
34196--34278
42
2.0
43
83
7
107
34
20
18
26
1.95
34989--35520
270
2.0
269
92
1
879
29
19
20
31
1.97
38229--38259
15
2.1
15
100
0
62
41
12
19
25
1.87
39111--39141
16
2.0
15
93
6
53
35
0
0
64
0.94

Tables:   1

The End!