Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007638.1 Corchorus capsularis cultivar CVL-1 contig07659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57216

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3097--3224
68
1.9
68
96
0
238
45
26
7
20
1.78
3862--3895
15
2.3
15
90
10
52
47
0
2
50
1.16
4286--4323
11
3.5
11
89
10
51
39
0
2
57
1.12
5742--5813
31
2.3
31
73
4
74
56
11
5
26
1.55
10061--10116
26
2.2
26
87
6
78
64
3
7
25
1.35
17994--18061
2
38.0
2
71
26
55
45
0
1
52
1.09
17994--18061
19
3.4
19
84
13
75
45
0
1
52
1.09
17994--18061
21
3.4
21
78
17
81
45
0
1
52
1.09
19737--19854
21
5.6
21
81
0
137
30
11
31
27
1.91
19733--19854
63
1.9
63
83
0
154
31
11
31
26
1.91
30376--30491
58
2.0
58
94
0
205
22
12
20
43
1.86
37170--37326
74
2.1
74
87
0
233
21
26
9
42
1.84
38747--38913
81
2.1
81
98
0
325
35
9
8
46
1.67
40794--40982
97
1.9
98
88
4
283
21
12
15
50
1.76
44943--45472
30
17.6
30
88
3
640
33
16
18
31
1.93
50322--50360
17
2.3
17
95
0
69
38
5
35
20
1.75
50446--50509
33
1.9
33
83
0
83
32
21
20
25
1.97
53599--53650
7
7.3
7
75
12
52
25
0
15
59
1.36
54211--54381
41
4.2
41
82
3
211
36
16
12
33
1.87

Tables:   1

The End!