Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007641.1 Corchorus capsularis cultivar CVL-1 contig07662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5030
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29


Found at i:4458 original size:31 final size:29

Alignment explanation


    Indices: 4422--4498  Score: 102
    Period size: 31  Copynumber: 2.6  Consensus size: 29

       4412 ACGGCTAAAA

                               *     *   
       4422 GCTCAATTTAGTACTAAACGTTTAATGTT
          1 GCTCAATTTAGTACTAAACCTTTAAAGTT

                            *              
       4451 GCACTCAATTTAGTACCAAACCTTTAAAGTT
          1 G--CTCAATTTAGTACTAAACCTTTAAAGTT

                              
       4482 GCTCAATTTAGT-CTAAA
          1 GCTCAATTTAGTACTAAA

       4499 TTCCCAATTT


Statistics
Matches: 42,  Mismatches: 4, Indels: 5
        0.82            0.08        0.10

Matches are distributed among these distances:
  28    4  0.10
  29   12  0.29
  31   26  0.62

ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36


Consensus pattern (29 bp):   
GCTCAATTTAGTACTAAACCTTTAAAGTT
Done.