Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007648.1 Corchorus capsularis cultivar CVL-1 contig07669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23002

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2010--2082
26
2.7
28
77
16
91
17
12
27
42
1.85
2010--2081
27
2.8
25
81
12
83
18
12
27
41
1.86
2214--2303
26
3.5
26
72
17
98
21
11
14
53
1.71
2203--2304
50
2.0
50
100
0
204
20
11
13
53
1.71
2623--2663
20
2.0
20
95
0
73
31
9
19
39
1.84
7102--7141
19
2.1
19
86
9
55
2
25
2
70
1.13
11448--11513
15
4.3
15
86
9
73
78
1
16
3
0.95
11450--11500
16
3.2
16
80
8
59
80
0
15
3
0.86
11448--11512
25
2.5
26
80
7
69
80
1
15
3
0.92
12639--12798
38
4.2
38
80
3
155
28
20
18
33
1.96
12651--12796
76
1.9
76
80
8
172
29
18
18
33
1.95
12851--12932
19
4.3
19
81
4
85
28
19
4
47
1.70
12863--12953
19
4.8
20
77
11
75
25
20
7
46
1.77
12986--13058
19
4.1
19
79
13
91
35
23
4
36
1.74
12981--13049
34
2.0
34
100
0
138
36
23
2
37
1.70
13011--13090
42
1.9
42
86
0
115
30
25
5
40
1.77
13011--13077
23
3.1
22
75
16
68
31
20
5
41
1.77
13497--13568
27
2.8
25
79
12
74
20
12
25
41
1.87
19833--19903
28
2.5
27
78
13
72
77
4
7
11
1.10
20936--21026
31
2.9
32
83
6
98
20
29
27
21
1.98
20760--21136
195
1.9
195
90
3
598
27
20
21
29
1.98
20957--21026
32
2.2
31
92
2
113
21
32
24
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20611--21026
226
1.8
225
88
3
640
27
21
23
27
1.99
21136--21210
32
2.3
32
90
0
114
21
25
22
30
1.99
21537--21561
10
2.5
10
100
0
50
16
0
28
56
1.41
22520--22576
22
2.6
22
97
0
105
28
7
10
54
1.60

Tables:   1

The End!