genome.fa.s7649.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007649.1 Corchorus capsularis cultivar CVL-1 contig07670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67338

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188--222	14	2.4	15	90	4	54	40	8	2	48	1.49
5152--5214	30	2.1	30	91	5	101	20	34	15	28	1.94
7986--8125	70	2.0	70	94	0	244	21	5	25	47	1.72
33396--33420	12	2.1	12	100	0	50	32	20	24	24	1.98
36312--36427	24	4.8	24	95	1	205	21	31	28	18	1.97
36914--36955	14	2.8	16	80	20	54	50	9	7	33	1.62
37853--37878	13	2.0	13	100	0	52	46	30	15	7	1.74
40157--40192	17	2.1	18	89	5	56	5	19	0	75	1.00
44426--44630	54	3.8	54	89	2	297	14	16	26	42	1.87
44888--45093	58	3.8	52	76	14	159	13	27	16	41	1.86
44929--45118	57	3.3	58	84	2	258	14	25	16	44	1.85
44930--45118	58	3.3	58	82	5	222	14	25	16	43	1.85
45180--45497	45	7.1	45	92	1	512	17	19	21	41	1.90
45543--45878	150	2.2	150	98	0	654	17	22	18	41	1.90
45648--45854	49	4.1	50	63	16	122	18	21	19	41	1.91
47171--47630	98	4.7	98	90	0	715	14	30	20	34	1.93
47171--47630	195	2.4	196	90	0	715	14	30	20	34	1.93
47666--47706	21	2.0	21	90	0	64	12	19	24	43	1.85
48583--48819	57	4.2	57	90	1	350	16	23	16	43	1.87
49943--49992	26	1.9	26	92	8	84	20	18	36	26	1.95
57064--57114	21	2.5	21	84	12	70	72	3	21	1	1.11
57323--57373	21	2.5	20	81	9	59	76	1	17	3	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59767--59810	23	2.0	23	95	4	81	50	4	18	27	1.66

Tables:   1

The End!