Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007662.1 Corchorus capsularis cultivar CVL-1 contig07683, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3459
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35


Found at i:44 original size:21 final size:22

Alignment explanation


    Indices: 1--46  Score: 60
    Period size: 21  Copynumber: 2.1  Consensus size: 22

                              *   
          1 TTCTAGCCCGTTGGAGCCTTTT
          1 TTCTAGCCCGTTGGAGCCCTTT

                                   
         23 TTCTAG-CCGTTGG-GCACCTTT
          1 TTCTAGCCCGTTGGAGC-CCTTT

               
         44 TTC
          1 TTC

         47 CACTTTTTCA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  20    2  0.09
  21   14  0.64
  22    6  0.27

ACGTcount: A:0.09, C:0.28, G:0.22, T:0.41


Consensus pattern (22 bp):   
TTCTAGCCCGTTGGAGCCCTTT
Done.