Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007671.1 Corchorus capsularis cultivar CVL-1 contig07692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14675
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:13835 original size:14 final size:15

Alignment explanation


    Indices: 13803--13832  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      13793 TTCCTGCATG

                     *     
      13803 AGATTTGGGGAGAAA
          1 AGATTTGGGAAGAAA

                           
      13818 AGATTTGGGAAGAAA
          1 AGATTTGGGAAGAAA

      13833 GATGTTCGTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.00, G:0.37, T:0.20


Consensus pattern (15 bp):   
AGATTTGGGAAGAAA

Found at i:14643 original size:2 final size:2

Alignment explanation


    Indices: 14636--14672  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

      14626 TTACCCAAAA

                                                                   
      14636 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

      14673 GTG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.