genome.fa.s7674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007674.1 Corchorus capsularis cultivar CVL-1 contig07695, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32219

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5611--5725	36	3.2	36	90	3	169	28	19	10	41	1.84
5718--6344	41	16.2	37	73	16	219	24	20	10	45	1.82
5736--5889	73	2.1	73	87	3	220	26	23	7	42	1.81
5904--6002	36	2.8	36	86	9	123	25	12	12	50	1.74
6009--6345	41	8.2	41	91	3	554	23	20	9	46	1.79
6290--6404	60	1.9	59	94	1	203	24	18	12	45	1.83
6415--6877	37	12.6	37	85	5	514	26	18	9	46	1.79
6780--6888	37	2.9	37	86	5	157	24	20	7	47	1.75
6852--7280	41	10.0	41	78	11	389	24	17	11	46	1.82
6850--7274	89	4.9	88	81	10	407	24	17	11	46	1.82
14687--14720	2	17.0	2	100	0	68	50	0	0	50	1.00
18406--18448	19	2.2	19	84	16	52	23	11	9	55	1.64
21307--21337	16	1.9	16	93	0	53	12	12	25	48	1.77
22045--22494	21	24.1	20	65	19	154	38	6	16	38	1.73
22097--22617	35	14.3	35	76	10	454	38	6	16	38	1.76
22076--22511	112	3.9	112	95	0	782	39	5	16	38	1.73
24172--24208	14	2.8	14	88	8	51	32	0	0	67	0.91
24178--24209	17	1.9	16	93	6	55	34	0	0	65	0.93
24167--24214	23	2.1	23	84	7	62	35	0	4	60	1.16
25634--26299	123	5.4	123	90	1	955	27	28	29	13	1.95
26824--26934	21	5.3	21	68	6	64	41	21	21	15	1.90
26736--26874	62	2.3	62	76	15	139	38	20	26	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26824--26956	41	3.2	41	70	7	126	39	21	21	18	1.93
26794--26950	83	1.9	81	86	2	206	40	19	25	14	1.89
26997--27046	20	2.4	21	78	21	61	40	22	26	12	1.88
27043--27423	97	3.9	97	80	8	418	34	23	28	13	1.93
27931--28219	96	3.0	96	88	0	436	41	20	19	19	1.91

Tables:   1

The End!