Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000768.1 Corchorus capsularis cultivar CVL-1 contig00768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:49 original size:16 final size:16

Alignment explanation


    Indices: 18--60  Score: 50
    Period size: 18  Copynumber: 2.6  Consensus size: 16

          8 ATTAAGTTTG

                *             
         18 ATTATTAAATATATATTA
          1 ATTAATAAATATATA--A

               *            
         36 ATTCATAAATATATAA
          1 ATTAATAAATATATAA

                     
         52 ATTAATAAA
          1 ATTAATAAA

         61 AATAAAAAAA


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  16    9  0.41
  18   13  0.59

ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42


Consensus pattern (16 bp):   
ATTAATAAATATATAA
Done.