Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007681.1 Corchorus capsularis cultivar CVL-1 contig07702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5228
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:4820 original size:30 final size:31

Alignment explanation


    Indices: 4783--4853  Score: 108
    Period size: 32  Copynumber: 2.3  Consensus size: 31

       4773 AGAAGAGAAG

                                      *    
       4783 GGAAAAAAA-TCTTTCTATCGCCTCCGATCA
          1 GGAAAAAAACTCTTTCTATCGCCTCCAATCA

            *                               
       4813 TGAAAAAAATCTCTTTCTATCGCCTCCAATCA
          1 GGAAAAAAA-CTCTTTCTATCGCCTCCAATCA

                     
       4845 GGAAAAAAA
          1 GGAAAAAAA

       4854 ATTAATTATT


Statistics
Matches: 36,  Mismatches: 3, Indels: 2
        0.88            0.07        0.05

Matches are distributed among these distances:
  30    8  0.22
  32   28  0.78

ACGTcount: A:0.39, C:0.24, G:0.11, T:0.25


Consensus pattern (31 bp):   
GGAAAAAAACTCTTTCTATCGCCTCCAATCA

Done.