Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007683.1 Corchorus capsularis cultivar CVL-1 contig07704, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77375

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--40
2
20.0
2
100
0
80
50
0
0
50
1.00
1661--1685
13
1.9
13
100
0
50
56
4
16
24
1.57
2015--2057
7
6.1
7
80
20
54
39
0
0
60
0.97
2015--2057
22
2.0
21
86
8
61
39
0
0
60
0.97
2203--2240
11
3.5
11
85
10
51
57
2
0
39
1.12
2621--2674
23
2.4
22
82
14
65
44
5
0
50
1.25
19811--19845
2
17.5
2
100
0
70
51
0
0
48
1.00
20021--20147
61
2.1
61
90
0
209
33
13
28
24
1.93
20124--20253
65
2.0
65
90
0
206
30
13
20
34
1.92
20696--20810
50
2.2
53
87
9
166
37
12
12
38
1.80
25098--25175
28
2.9
27
87
10
115
39
21
17
20
1.92
28158--28186
3
9.7
3
100
0
58
68
31
0
0
0.89
29009--29034
12
2.2
12
100
0
52
34
7
0
57
1.27
31155--31203
17
3.0
17
79
8
66
63
16
8
12
1.51
31155--31202
15
3.1
15
71
11
51
62
16
8
12
1.53
31831--31930
48
2.1
48
100
0
200
42
8
15
35
1.76
38153--38186
15
2.3
15
89
0
50
79
2
17
0
0.86
42313--42349
17
2.2
17
90
0
56
27
21
29
21
1.99
55420--55462
17
2.6
16
85
10
59
25
23
16
34
1.95
55771--55924
80
1.9
80
100
0
308
38
10
17
33
1.84
58096--58610
255
2.0
255
98
0
996
37
8
16
36
1.80
63112--63154
9
4.8
9
79
0
50
4
13
0
81
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71138--71208
35
2.0
35
91
0
115
19
5
16
57
1.59
72146--72272
31
4.1
31
95
0
227
19
20
22
37
1.95
73511--73554
21
2.0
22
86
8
63
36
13
11
38
1.81
77297--77332
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!