Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007684.1 Corchorus capsularis cultivar CVL-1 contig07705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70313

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6258--6966
213
3.3
213
93
2
1122
27
14
19
38
1.91
11897--12311
205
2.0
206
97
0
778
26
16
24
32
1.96
26268--26328
30
2.0
30
90
0
95
18
47
14
19
1.82
26370--26739
144
2.6
144
93
0
632
22
47
6
23
1.75
28431--28500
34
2.1
34
100
0
140
37
25
15
21
1.93
33551--33579
11
2.7
11
94
5
51
48
0
0
51
1.00
33585--33637
22
2.5
21
78
6
63
45
9
5
39
1.60
35622--35656
18
1.9
18
94
0
61
31
57
0
11
1.34
35680--35725
24
1.9
24
86
0
65
23
56
4
15
1.57
35712--35746
18
1.9
18
94
0
61
40
57
2
0
1.14
35609--35740
42
3.1
42
76
0
138
25
56
4
13
1.56
35793--35876
36
2.3
36
83
0
105
22
54
10
11
1.67
35859--36459
30
19.8
31
74
8
398
23
49
3
23
1.66
35891--35960
18
3.9
18
67
0
50
30
51
4
14
1.61
35921--36454
60
8.9
58
84
6
516
22
49
3
24
1.66
35921--36448
120
4.4
120
85
0
610
22
49
3
23
1.66
35970--36459
180
2.7
180
87
0
665
22
49
3
24
1.66
36486--36541
18
3.1
17
80
10
58
25
57
5
12
1.56
36570--36604
18
1.9
18
88
0
52
14
68
11
5
1.37
36591--36643
24
2.2
24
79
0
61
26
54
9
9
1.63
38287--38316
16
1.9
15
93
6
51
83
0
16
0
0.65
40129--40169
15
2.5
17
88
11
59
31
17
19
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40728--40761
2
17.0
2
100
0
68
50
0
0
50
1.00
42054--42112
28
2.1
28
100
0
118
35
3
6
54
1.44
43980--44032
27
2.0
26
92
3
88
30
20
7
41
1.80
44882--45059
94
1.9
91
96
3
329
39
8
14
37
1.77
47265--47294
14
2.2
14
94
5
53
46
0
0
53
1.00
48229--48262
6
5.7
6
92
0
59
29
2
17
50
1.61
49624--49656
2
16.5
2
100
0
66
48
0
0
51
1.00
62407--62491
2
45.0
2
76
19
76
48
1
2
48
1.22
63995--64157
60
2.7
61
85
8
219
36
17
18
28
1.93
64191--64304
60
1.9
60
85
0
156
28
14
19
38
1.90
64633--64669
17
2.1
18
90
5
58
51
0
2
45
1.15
65783--65808
2
13.0
2
100
0
52
50
0
0
50
1.00
66211--66248
2
20.0
2
89
10
62
47
0
0
52
1.00

Tables:   1

The End!