Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007687.1 Corchorus capsularis cultivar CVL-1 contig07708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29980

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24--7627
330
22.9
331
76
8
6000
33
13
15
37
1.87
8895--8930
9
4.0
9
96
0
63
33
0
19
47
1.50
10526--10607
29
2.8
29
96
1
146
23
20
12
43
1.85
10758--10818
29
2.1
29
87
6
88
44
16
19
19
1.87
19131--20980
329
5.7
324
77
9
1644
33
14
15
36
1.88
21396--21422
2
13.5
2
100
0
54
48
0
0
51
1.00
21076--22427
323
4.2
318
78
12
990
32
14
16
35
1.90
21477--22765
323
4.0
323
85
5
1537
31
15
17
35
1.91
26219--26274
27
2.1
27
100
0
112
23
17
17
41
1.90
29849--29898
25
2.1
24
88
7
75
54
6
4
36
1.44

Tables:   1

The End!