Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007688.1 Corchorus capsularis cultivar CVL-1 contig07709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48273

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
522--619
40
2.4
42
86
6
139
51
6
20
22
1.69
655--737
32
2.5
33
80
5
105
51
3
20
24
1.63
711--764
26
2.1
26
86
6
74
53
3
14
27
1.58
766--839
37
2.0
36
87
10
105
60
2
18
17
1.47
797--845
15
3.3
15
77
11
55
57
2
20
20
1.51
902--963
28
2.3
28
75
8
76
59
0
22
17
1.37
909--971
28
2.2
28
78
13
76
60
0
23
15
1.35
2311--2404
34
2.7
34
81
4
109
23
26
18
31
1.97
5684--6057
35
10.7
35
85
2
448
38
10
18
33
1.84
9693--9771
41
2.0
37
83
9
95
39
20
18
21
1.93
12807--13065
107
2.5
105
84
7
346
41
8
8
41
1.66
14642--14683
15
2.8
15
80
20
52
45
0
4
50
1.23
20101--20135
11
3.2
11
91
0
61
25
14
37
22
1.92
22515--22604
46
2.0
46
93
0
153
44
18
11
25
1.83
22584--22778
53
3.7
53
90
2
304
25
14
10
48
1.76
23481--23510
5
6.0
5
92
0
51
0
43
0
56
0.99
23478--23510
15
2.1
16
94
5
59
0
42
0
57
0.98
27321--27378
28
2.0
29
90
3
91
12
20
18
48
1.80
27223--27525
130
2.3
130
86
3
423
14
20
25
39
1.91
27566--27797
102
2.3
102
95
0
410
16
19
24
39
1.92
28059--28191
50
2.7
50
85
4
162
14
27
29
29
1.95
28554--28600
21
2.3
20
78
7
51
65
8
8
17
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29916--29955
19
2.2
18
86
4
53
30
20
5
45
1.72
30192--30395
103
2.0
103
95
0
363
38
17
17
26
1.92
33184--33210
7
3.9
7
100
0
54
29
11
29
29
1.91
34270--34394
60
2.0
63
92
4
211
43
8
36
12
1.71
34584--34761
90
2.0
90
100
0
356
35
17
10
36
1.84
43485--43569
23
3.6
24
75
10
86
56
4
8
30
1.49
43475--43569
47
2.0
46
95
2
172
56
4
8
30
1.48
44503--44539
18
2.1
17
90
5
56
16
2
2
78
0.98
44516--44555
12
3.2
13
86
13
50
20
0
0
80
0.72
44920--44967
10
4.7
10
85
10
62
33
0
0
66
0.92
44920--44981
9
6.6
9
77
18
56
30
1
0
67
1.00
44921--44966
11
4.3
11
88
2
67
30
0
0
69
0.89
44921--44966
22
2.2
21
92
7
76
30
0
0
69
0.89
45180--45239
28
2.1
28
93
0
102
50
8
8
33
1.63
48039--48063
5
5.0
5
100
0
50
20
0
0
80
0.72

Tables:   1

The End!