Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007696.1 Corchorus capsularis cultivar CVL-1 contig07717, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52457

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4684--4817
37
3.6
34
80
10
115
34
20
17
27
1.95
14315--14372
29
2.0
29
100
0
116
44
13
20
20
1.85
15661--15688
14
2.0
14
100
0
56
21
14
14
50
1.78
15876--15914
20
2.0
20
94
0
69
30
10
17
41
1.83
16459--16497
19
2.1
19
100
0
78
38
5
25
30
1.78
16462--16503
19
2.4
17
88
11
59
38
4
21
35
1.75
17088--17127
19
2.1
19
85
4
53
22
25
5
47
1.71
19140--19172
17
2.0
17
88
5
50
69
0
30
0
0.88
20067--20099
14
2.4
14
90
5
50
42
9
15
33
1.78
20591--20671
36
2.5
30
75
22
92
40
9
19
29
1.84
20590--20662
36
2.0
36
97
0
137
39
9
19
31
1.84
20601--20678
36
2.2
36
86
9
106
43
10
19
26
1.83
41628--41671
21
2.1
21
86
0
61
22
40
6
29
1.80
41765--41811
24
2.1
22
84
11
60
31
23
0
44
1.54
41821--41888
26
2.6
26
90
0
109
54
10
1
33
1.43
42172--42217
21
2.1
22
88
4
67
36
8
39
15
1.78
42611--42635
2
12.5
2
100
0
50
48
0
0
52
1.00
45814--45841
12
2.3
12
100
0
56
92
0
7
0
0.37
51863--51897
18
1.9
18
88
0
52
17
5
37
40
1.73

Tables:   1

The End!