Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007697.1 Corchorus capsularis cultivar CVL-1 contig07718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13943
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:1276 original size:5 final size:5

Alignment explanation


    Indices: 1266--1302  Score: 74
    Period size: 5  Copynumber: 7.4  Consensus size: 5

       1256 CATAAATTGC

                                                        
       1266 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA AT
          1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA AT

       1303 ATAGTACTTT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   32  1.00

ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59


Consensus pattern (5 bp):   
ATTTA

Found at i:13683 original size:25 final size:25

Alignment explanation


    Indices: 13633--13685  Score: 61
    Period size: 26  Copynumber: 2.1  Consensus size: 25

      13623 ATAGCATATT

                         *           
      13633 AATTAATTTGTAATATAATATGAAA
          1 AATTAATTTGTAAAATAATATGAAA

                     *       *    *   
      13658 AATTAATTTTTATAAATCATATAAAA
          1 AATTAATTTGTA-AAATAATATGAAA

              
      13684 AA
          1 AA

      13686 GAAACAAATC


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  25   11  0.48
  26   12  0.52

ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40


Consensus pattern (25 bp):   
AATTAATTTGTAAAATAATATGAAA
Done.