Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007698.1 Corchorus capsularis cultivar CVL-1 contig07719, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9350
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28


Found at i:4494 original size:3 final size:3

Alignment explanation


    Indices: 4486--4519  Score: 68
    Period size: 3  Copynumber: 11.3  Consensus size: 3

       4476 TGTAAGCTTA

                                                         
       4486 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T

       4520 CAATAATGGT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TAT

Done.