Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007699.1 Corchorus capsularis cultivar CVL-1 contig07720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94980

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2080--2112
17
1.9
17
88
11
50
81
9
0
9
0.87
3952--4032
32
2.6
32
94
2
137
18
17
19
44
1.87
19285--19313
2
14.5
2
100
0
58
48
0
0
51
1.00
20615--20709
38
2.5
38
98
1
183
15
37
18
27
1.92
22123--22152
2
15.0
2
100
0
60
50
0
0
50
1.00
23146--23190
7
6.4
7
97
0
81
73
0
15
11
1.10
26331--26385
27
2.0
27
85
0
74
34
18
16
30
1.93
27978--28032
27
2.0
27
89
0
83
36
18
14
30
1.91
41571--41672
31
3.4
30
66
15
84
36
20
19
23
1.95
41701--41771
31
2.3
31
97
0
133
22
21
15
40
1.90
41730--41892
60
2.7
60
85
1
220
27
19
17
35
1.94
42285--42590
41
7.5
41
90
0
423
30
16
17
35
1.92
42689--42723
16
2.2
16
94
0
61
14
25
14
45
1.82
44429--44513
16
5.7
15
78
10
95
4
17
42
35
1.70
44458--44515
6
9.5
6
75
17
57
1
18
43
36
1.61
44429--44500
31
2.3
31
90
4
110
5
16
41
36
1.72
46261--46518
41
6.3
41
91
0
408
29
15
18
36
1.91
46620--46650
16
1.9
16
93
0
53
12
19
19
48
1.81
61290--61316
13
2.1
13
100
0
54
40
22
7
29
1.81
66515--66547
17
1.9
17
93
0
57
27
9
36
27
1.87
66898--67262
155
2.3
154
78
8
364
34
19
15
31
1.92
73413--73452
15
2.7
15
92
0
62
25
37
27
10
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75886--75910
2
12.5
2
100
0
50
52
0
0
48
1.00
89900--89936
17
2.1
18
95
5
67
32
35
5
27
1.79
93940--93974
2
17.5
2
93
0
61
45
0
2
51
1.16

Tables:   1

The End!