genome.fa.s7700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007700.1 Corchorus capsularis cultivar CVL-1 contig07721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36378

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123--169	24	2.0	24	95	0	85	36	0	10	53	1.36
3691--3776	26	3.2	26	65	26	70	52	6	18	22	1.69
3692--3779	29	3.1	29	63	21	78	51	6	19	22	1.70
3631--3859	111	2.1	103	86	6	305	50	6	17	25	1.70
3631--3859	55	4.3	55	87	5	303	50	6	17	25	1.70
4091--4325	22	10.8	21	69	15	104	57	6	18	17	1.60
4263--4325	21	3.0	21	92	2	99	58	9	19	12	1.61
8925--8960	18	2.0	18	88	0	54	8	38	5	47	1.57
12199--12834	131	4.8	131	80	8	610	39	13	10	36	1.78
12199--12834	135	4.8	134	82	4	646	39	13	10	36	1.78
12611--12782	33	5.2	33	65	25	76	42	13	9	34	1.77
13038--13098	30	2.0	30	93	0	104	42	14	8	34	1.76
13247--13280	17	2.0	17	100	0	68	29	11	23	35	1.90
13521--13555	18	1.9	18	88	0	52	8	22	2	65	1.34
15885--16110	115	2.0	115	97	0	425	22	15	25	37	1.92
19550--19609	30	2.0	31	83	9	79	45	11	1	41	1.50
20711--20944	22	10.5	22	71	13	149	38	9	15	37	1.80
20713--20813	45	2.3	44	83	6	123	37	9	13	38	1.79
20713--20944	66	3.5	68	80	10	230	38	9	15	37	1.79
20968--21108	22	6.5	21	71	13	90	34	7	18	39	1.78
20949--21108	44	3.7	43	76	12	148	35	8	17	38	1.79
21194--21380	22	8.6	22	73	10	82	42	8	12	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21194--21357	66	2.5	64	77	8	152	42	7	12	37	1.71
21169--21359	22	8.6	22	72	13	108	42	8	13	36	1.74
21400--21623	22	10.5	22	67	14	114	40	8	15	35	1.78
21467--21623	66	2.4	65	80	8	167	42	9	14	34	1.78
21465--22012	44	12.3	44	66	13	178	38	10	15	36	1.81
21604--21645	22	1.9	22	85	0	57	45	11	16	26	1.82
21687--21885	22	8.8	22	67	13	75	34	12	15	38	1.84
21799--21886	45	2.0	45	84	4	115	32	12	18	36	1.88
21799--21927	22	5.8	22	76	7	100	34	13	17	34	1.88
21981--22026	22	2.1	22	84	8	58	50	10	8	30	1.68
22168--22231	31	2.1	31	90	0	101	28	20	4	46	1.70
22327--22391	30	2.1	31	88	2	96	29	20	4	46	1.70
23531--23562	16	2.0	16	100	0	64	50	18	18	12	1.78
24405--24442	20	2.0	20	85	15	53	28	7	2	60	1.38
24589--24738	22	6.7	22	66	10	63	36	10	15	38	1.81
24621--24717	44	2.2	44	85	7	126	37	10	16	36	1.83
24828--25083	22	11.5	22	67	15	87	38	10	16	34	1.83
24828--24916	44	2.0	43	82	2	106	38	7	17	35	1.79
25005--25099	44	2.2	44	80	3	102	40	12	15	31	1.85
24974--25169	22	8.8	22	70	7	85	41	11	13	33	1.80
25252--25304	20	2.7	20	76	8	63	39	9	15	35	1.79
25291--25432	22	6.5	22	72	7	110	41	9	14	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25252--25505	44	6.0	43	70	13	161	40	8	16	34	1.78
25435--25497	23	2.8	22	83	7	65	41	6	14	38	1.71
25517--25561	22	2.1	21	84	8	56	35	11	11	42	1.76
25592--25676	45	1.9	44	85	2	116	31	11	16	40	1.85
25590--25680	22	4.1	22	77	2	83	31	10	15	41	1.82
25911--25940	2	15.0	2	100	0	60	50	0	0	50	1.00
28684--28781	46	2.1	48	94	3	173	41	20	6	31	1.77
29920--29979	31	1.9	31	86	6	86	30	20	3	46	1.66
30294--30331	19	2.0	19	85	10	51	28	2	2	65	1.19
30312--30340	14	2.1	14	93	6	51	34	6	0	58	1.25
30532--30587	22	2.6	21	83	8	76	35	12	17	33	1.88
30544--30632	46	1.9	46	81	4	108	32	10	19	38	1.85
30545--30639	22	4.2	22	78	5	73	30	9	21	38	1.85
30863--31081	22	9.9	22	71	10	117	42	9	14	34	1.78
31162--31212	19	2.6	20	90	6	86	45	11	17	25	1.83
31195--31333	22	6.4	21	70	14	68	39	8	15	35	1.79
31200--31323	44	2.9	42	81	7	133	40	9	12	37	1.77
31319--31360	22	2.0	21	85	4	57	42	9	21	26	1.83
31390--31493	23	4.6	22	78	12	88	38	7	14	39	1.75
31443--31517	22	3.4	22	77	3	71	36	12	14	37	1.83
33300--33366	35	1.9	35	87	6	100	61	10	5	22	1.50

Tables:   1

The End!