Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007703.1 Corchorus capsularis cultivar CVL-1 contig07724, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8767
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:7999 original size:33 final size:32

Alignment explanation


    Indices: 7913--8052  Score: 111
    Period size: 33  Copynumber: 4.2  Consensus size: 32

       7903 AAAGGATCAT

                                  *          *
       7913 GTGGCCGGTTGTGGCCGGGCATGGCCGA-GTCAA
          1 GTGGCCGG-TGTGGCCGGGCATCGCC-ATGTCAC

               *        *  *      *        * 
       7946 GTGTCCGGGTGTAGCTGGGCATGGCCATGTCGC
          1 GTGGCC-GGTGTGGCCGGGCATCGCCATGTCAC

                                   *      ** 
       7979 GTGGCCGGTGATGGCCGGGCATCTCCATGTTGC
          1 GTGGCCGGTG-TGGCCGGGCATCGCCATGTCAC

            *          *           *         
       8012 ATGGCCGGTGTTGCGCGGGCATCTCCATGTCAC
          1 GTGGCCGGTGTGGC-CGGGCATCGCCATGTCAC

                    
       8045 GTGGCCGG
          1 GTGGCCGG

       8053 ATTTCCAAAT


Statistics
Matches: 87,  Mismatches: 16, Indels: 8
        0.78            0.14        0.07

Matches are distributed among these distances:
  32    8  0.09
  33   77  0.89
  34    2  0.02

ACGTcount: A:0.10, C:0.26, G:0.41, T:0.22


Consensus pattern (32 bp):   
GTGGCCGGTGTGGCCGGGCATCGCCATGTCAC
Done.