Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007705.1 Corchorus capsularis cultivar CVL-1 contig07726, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25435

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
216--248
2
16.5
2
100
0
66
51
0
0
48
1.00
298--369
31
2.3
30
76
6
81
59
11
5
23
1.52
378--418
20
2.0
20
95
0
73
39
31
4
24
1.76
1878--1952
29
2.6
29
79
12
82
28
1
2
68
1.12
3405--3443
19
2.1
19
95
0
69
33
10
0
56
1.33
6379--6504
63
2.0
63
98
0
243
14
16
22
46
1.83
6982--7084
52
2.0
52
96
0
188
26
9
16
47
1.77
7139--7266
64
2.0
64
95
0
229
19
22
21
35
1.96
15801--15876
38
2.0
38
92
0
125
22
14
21
42
1.89
16107--16156
24
2.1
24
96
0
91
22
10
22
46
1.81
19656--19688
14
2.3
15
89
5
50
36
15
0
48
1.45
20460--20733
109
2.5
110
92
5
448
38
11
1
48
1.50
22979--23022
11
4.0
11
88
8
54
43
0
2
54
1.12
23449--23479
16
1.9
16
93
0
53
35
9
0
54
1.33
24057--24795
398
1.9
394
88
4
1112
35
17
12
34
1.88
24057--24795
201
3.7
201
88
5
1058
35
17
12
34
1.88
24982--25035
22
2.4
23
78
12
67
31
14
7
46
1.73

Tables:   1

The End!