Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007706.1 Corchorus capsularis cultivar CVL-1 contig07727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31339

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4234--4281
16
2.9
16
87
3
60
8
12
4
75
1.18
5473--5545
26
2.8
26
78
18
80
41
26
15
17
1.89
13249--13419
85
2.0
85
98
0
333
31
13
23
31
1.93
15443--15469
6
4.5
6
100
0
54
18
14
0
66
1.25
20073--20112
5
7.8
5
94
5
71
80
0
0
20
0.72
21259--21308
6
7.8
6
80
10
55
78
16
2
4
1.00
21278--21317
20
1.9
21
85
10
55
80
7
5
7
1.03
23121--23155
18
1.9
18
88
0
52
28
5
28
37
1.80
27685--27772
27
3.2
26
66
13
68
25
10
15
48
1.76
27915--27964
17
3.1
17
66
16
52
50
16
22
12
1.77
30343--30582
41
5.7
40
76
14
205
22
10
26
40
1.86
30376--30610
41
5.5
42
75
11
190
23
11
25
38
1.89
30331--30626
87
3.5
86
86
5
368
22
11
26
39
1.88

Tables:   1

The End!