Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007708.1 Corchorus capsularis cultivar CVL-1 contig07729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83585

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8136--8416
129
2.2
129
81
1
312
20
27
15
36
1.93
8357--8585
96
2.4
93
78
5
253
20
34
12
33
1.90
10943--10977
16
2.2
16
90
10
54
77
8
0
14
0.99
19720--19744
1
25.0
1
100
0
50
0
0
100
0
0.00
32364--32542
24
7.5
24
90
2
288
15
38
22
24
1.92
32642--32705
21
2.9
22
80
15
60
10
31
20
37
1.87
32620--32721
24
4.4
23
71
16
68
13
29
21
35
1.92
36766--36801
6
6.0
6
93
0
54
50
0
38
11
1.38
40936--40978
21
2.0
21
100
0
86
27
9
9
53
1.63
60687--60794
55
2.0
55
100
0
216
29
11
16
42
1.83
63333--63362
2
15.0
2
100
0
60
50
0
0
50
1.00
66537--66561
3
8.3
3
100
0
50
0
32
0
68
0.90

Tables:   1

The End!