Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007713.1 Corchorus capsularis cultivar CVL-1 contig07734, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78054

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--27
2
13.5
2
100
0
54
48
0
0
51
1.00
502--545
22
2.0
22
90
0
70
25
29
25
20
1.99
3094--3139
24
1.9
24
95
0
83
43
21
26
8
1.81
3124--3383
106
2.5
106
94
0
450
34
21
20
23
1.97
3449--3490
16
2.6
16
100
0
84
33
7
7
52
1.56
3802--3861
25
2.4
25
82
0
66
23
36
25
15
1.93
3929--5214
119
10.7
119
84
4
1575
33
25
24
17
1.96
3929--5214
239
5.4
238
91
2
1800
33
25
24
17
1.96
4980--5016
14
2.6
14
95
0
65
35
13
29
21
1.92
4861--5135
133
2.1
133
89
1
417
32
23
24
19
1.98
5886--5947
22
2.8
22
97
0
115
25
32
24
17
1.97
17123--17166
7
6.0
7
92
7
70
0
15
0
84
0.63
17123--17166
22
2.0
22
95
0
79
0
15
0
84
0.63
17123--17166
15
2.9
15
93
6
72
0
15
0
84
0.63
22014--22070
12
4.8
12
75
14
55
54
3
42
0
1.17
22014--22070
24
2.4
24
90
0
87
54
3
42
0
1.17
28245--28270
7
3.7
7
100
0
52
30
0
26
42
1.56
32952--33086
67
2.0
67
100
0
270
23
17
14
43
1.87
43398--43482
35
2.4
36
80
2
91
25
3
11
58
1.49
58418--58468
3
16.7
3
95
4
93
66
0
33
0
0.92
72705--76009
333
10.0
329
82
6
3439
34
17
14
33
1.90
72702--76009
664
5.0
663
83
5
3749
34
17
14
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77590--77634
13
3.5
13
90
3
74
22
13
8
55
1.65

Tables:   1

The End!