Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007716.1 Corchorus capsularis cultivar CVL-1 contig07737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124301

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13448--13480
15
2.2
15
100
0
66
45
15
12
27
1.81
15351--15383
16
2.1
16
100
0
66
24
24
33
18
1.97
15374--15425
17
3.1
17
85
0
77
19
11
32
36
1.87
15378--15435
17
3.4
17
82
0
71
15
6
37
39
1.74
27846--28231
210
1.8
210
95
0
700
42
20
15
21
1.89
38015--38066
25
2.1
25
100
0
104
36
19
3
40
1.70
40834--40865
6
5.3
6
96
0
55
18
28
18
34
1.95
48391--48852
229
2.0
229
99
0
915
28
21
16
34
1.95
64097--64125
3
9.7
3
100
0
58
0
31
0
68
0.89
68104--68140
19
1.9
19
94
0
65
29
18
13
37
1.90
82577--82602
13
2.0
13
100
0
52
0
30
0
69
0.89
82569--82602
6
5.5
6
89
6
50
0
29
0
70
0.87
82569--82609
19
2.2
18
86
4
55
2
31
0
65
1.05
85862--85895
18
1.9
18
94
5
61
5
26
0
67
1.13
103344--103378
17
2.1
17
94
0
61
22
40
5
31
1.78
121763--121820
29
2.2
26
81
12
64
41
8
6
43
1.62
122755--122802
22
2.3
20
86
10
62
39
25
16
18
1.91
122722--122824
53
1.9
53
90
0
161
36
26
19
17
1.94
122774--122872
31
3.2
31
86
0
126
34
26
20
19
1.96

Tables:   1

The End!