Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007717.1 Corchorus capsularis cultivar CVL-1 contig07738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96571

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27102--27141
20
2.0
20
100
0
80
30
15
0
55
1.41
27174--27210
9
4.0
10
83
16
53
62
0
37
0
0.96
27467--27499
6
5.3
6
92
7
57
69
30
0
0
0.88
27612--27636
3
8.3
3
100
0
50
64
0
36
0
0.94
39893--39929
19
1.9
19
100
0
74
45
16
5
32
1.70
41839--41924
43
2.0
43
97
0
163
34
19
16
29
1.94
43310--43371
15
3.7
15
74
25
61
38
3
8
50
1.48
43304--43366
22
3.1
20
82
10
67
38
3
7
50
1.47
43306--43381
37
2.1
36
97
2
143
38
5
7
48
1.55
47929--47965
18
2.1
18
89
0
56
45
21
10
21
1.82
56978--57002
13
1.9
13
100
0
50
32
4
16
48
1.64
56955--57039
39
2.4
36
83
13
97
34
7
11
47
1.67
58232--58298
33
2.1
32
91
5
109
25
40
2
31
1.71
58853--59013
80
2.0
80
100
0
322
27
17
26
28
1.98
75432--75458
2
13.5
2
100
0
54
0
48
0
51
1.00
75458--75482
2
12.5
2
100
0
50
48
0
0
52
1.00
81104--81196
43
2.2
43
98
0
177
25
24
8
40
1.83
82399--82436
3
12.7
3
100
0
76
0
0
31
68
0.90
92974--93006
2
16.5
2
100
0
66
51
0
0
48
1.00
93955--93994
3
13.3
3
94
0
71
30
0
2
67
1.04

Tables:   1

The End!