Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007719.1 Corchorus capsularis cultivar CVL-1 contig07740, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6644
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31


Found at i:4755 original size:20 final size:19

Alignment explanation


    Indices: 4716--4756  Score: 55
    Period size: 20  Copynumber: 2.1  Consensus size: 19

       4706 GAAGTCGACT

                          **   
       4716 AGGAGAAATCGACTTTACA
          1 AGGAGAAATCGACTACACA

                                
       4735 AGGAGCAAATCGACTACACA
          1 AGGAG-AAATCGACTACACA

              
       4755 AG
          1 AG

       4757 TCGACTTTTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  19    5  0.26
  20   14  0.74

ACGTcount: A:0.44, C:0.20, G:0.22, T:0.15


Consensus pattern (19 bp):   
AGGAGAAATCGACTACACA
Done.