Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007721.1 Corchorus capsularis cultivar CVL-1 contig07742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15420

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193--420
7
33.6
7
66
18
99
16
25
2
56
1.53
148--402
35
7.6
35
70
17
175
17
23
3
56
1.56
263--287
12
2.1
12
100
0
50
16
32
0
52
1.44
236--414
40
4.2
40
69
24
125
16
22
2
57
1.52
230--363
47
2.9
47
88
6
200
15
25
2
56
1.51
262--335
19
3.8
19
75
10
78
16
25
1
56
1.48
325--434
20
5.4
19
70
16
62
15
22
2
59
1.49
309--371
27
2.3
26
76
7
63
14
23
1
60
1.43
163--444
82
3.4
81
81
8
331
16
24
3
56
1.55
345--459
47
2.4
49
82
11
148
17
20
5
56
1.60
554--578
7
3.6
7
100
0
50
16
28
0
56
1.41
560--807
22
11.5
22
71
12
156
20
20
4
54
1.61
653--727
20
3.7
20
72
12
55
24
20
5
50
1.68
711--758
23
2.1
22
81
11
53
25
20
2
52
1.58
2623--2718
47
2.0
47
100
0
192
10
13
25
51
1.73
2632--2731
47
2.1
47
90
0
155
13
15
24
48
1.80
4037--4156
62
1.9
62
93
3
206
12
17
2
67
1.33
9086--9150
31
2.1
31
94
2
114
24
20
6
49
1.71
11745--11838
45
2.1
45
96
2
172
41
2
17
39
1.61
12568--12630
16
3.9
16
75
8
65
33
33
20
12
1.90
13464--13531
16
4.2
16
76
0
73
33
33
22
10
1.88
13818--13862
17
2.8
16
90
6
65
64
2
26
6
1.30

Tables:   1

The End!