Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007723.1 Corchorus capsularis cultivar CVL-1 contig07744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25326

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4943--4998
27
2.1
27
93
0
94
37
7
23
32
1.82
5164--5197
6
6.0
6
96
3
54
35
17
0
47
1.48
8457--8495
12
3.6
12
80
19
50
25
28
15
30
1.96
9644--9683
16
2.5
16
91
0
62
10
12
40
37
1.77
13801--13839
20
2.0
20
90
9
64
17
51
25
5
1.66
15702--15997
22
13.4
22
72
12
89
45
3
20
30
1.68
15720--16096
8
51.0
7
67
22
118
45
4
19
29
1.70
15756--16141
104
3.7
100
77
10
366
45
4
20
29
1.71
15703--16149
44
10.3
43
73
16
250
45
4
20
29
1.72
16035--16173
22
6.3
22
75
13
108
44
5
21
28
1.75
15852--16118
30
9.0
31
70
19
110
46
5
20
28
1.73
16207--16240
16
2.0
18
88
11
54
44
11
20
23
1.84
16274--16377
8
13.0
8
68
13
54
46
3
21
28
1.69
16278--16337
24
2.5
24
88
0
84
46
5
18
30
1.70
16626--16659
18
1.9
18
88
5
52
44
11
17
26
1.83
17675--17719
6
7.7
6
85
5
65
15
0
17
66
1.25
18028--18093
33
2.0
34
93
3
116
37
15
9
37
1.79

Tables:   1

The End!