Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007727.1 Corchorus capsularis cultivar CVL-1 contig07748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53876

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3532--3698
55
2.9
57
88
5
248
10
24
23
41
1.85
3532--3701
58
3.0
58
88
5
265
10
24
23
41
1.86
4013--4040
2
14.0
2
100
0
56
50
0
0
50
1.00
4504--4532
3
9.7
3
100
0
58
65
0
0
34
0.93
4533--4570
3
12.7
3
100
0
76
34
0
0
65
0.93
10976--11005
11
2.7
11
94
0
51
56
10
13
20
1.65
11529--11664
68
2.0
68
86
0
191
33
14
22
28
1.94
11684--11799
49
2.4
49
97
0
214
35
10
6
47
1.65
17392--17424
13
2.8
12
90
9
50
90
0
9
0
0.44
25884--25909
2
13.0
2
100
0
52
50
0
0
50
1.00
28120--28281
82
1.9
83
87
10
242
35
13
15
35
1.87
29476--29500
12
2.1
12
100
0
50
32
0
16
52
1.44
30744--31114
156
2.4
156
78
8
389
30
14
20
33
1.93
32056--32138
34
2.5
34
90
5
127
18
30
16
34
1.93
35002--35037
10
3.6
10
92
0
63
33
8
19
38
1.82
35036--35070
18
1.9
18
88
0
52
42
14
17
25
1.86
35036--35098
20
3.3
19
79
18
60
38
15
20
25
1.92
36321--36414
31
3.0
31
79
0
116
17
21
24
37
1.94
47374--47399
7
3.7
7
100
0
52
0
0
11
88
0.52
52897--52924
12
2.3
12
100
0
56
28
14
0
57
1.38

Tables:   1

The End!