Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000774.1 Corchorus capsularis cultivar CVL-1 contig00774, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38


Found at i:695 original size:12 final size:12

Alignment explanation


    Indices: 662--688  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        652 GTCTCCTTTT

                        
        662 TGGATTGATGAA
          1 TGGATTGATGAA

                        
        674 TGGATTGATGAA
          1 TGGATTGATGAA

               
        686 TGG
          1 TGG

        689 GATGATGCAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33


Consensus pattern (12 bp):   
TGGATTGATGAA

Found at i:1003 original size:18 final size:19

Alignment explanation


    Indices: 982--1019  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        972 GAACCCCTTT

                               
        982 TCTCCT-TTGTAAAATCCA
          1 TCTCCTATTGTAAAATCCA

                               
       1000 TCTCCTATTGTAAAATCCA
          1 TCTCCTATTGTAAAATCCA

             
       1019 T
          1 T

       1020 GCTGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18    6  0.32
  19   13  0.68

ACGTcount: A:0.29, C:0.26, G:0.05, T:0.39


Consensus pattern (19 bp):   
TCTCCTATTGTAAAATCCA

Done.