Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007741.1 Corchorus capsularis cultivar CVL-1 contig07762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46778

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5665--5703
19
2.0
19
90
5
60
46
20
5
28
1.72
10068--10127
22
2.7
22
82
5
77
38
11
13
36
1.81
10085--10341
22
11.9
22
71
11
93
35
15
8
39
1.79
10094--10193
23
4.5
23
82
3
98
40
15
8
37
1.76
10098--10216
45
2.7
43
77
14
109
36
15
8
39
1.77
10092--10317
44
5.2
44
75
14
136
34
15
9
41
1.79
10246--10346
44
2.3
44
83
8
125
33
15
8
41
1.79
10441--10672
44
5.2
44
75
7
175
33
16
9
40
1.81
10485--10613
66
2.0
65
83
6
161
34
16
9
40
1.80
10441--10674
22
10.6
22
73
12
126
33
16
9
40
1.81
10697--10834
22
6.3
21
71
15
84
34
19
8
36
1.83
10737--10834
44
2.2
44
80
7
110
33
21
10
34
1.87
11012--11085
12
6.2
12
72
10
62
5
22
0
71
1.06
11016--11074
26
2.3
26
83
16
79
5
22
0
72
1.03
12609--12655
22
2.2
22
92
3
78
38
10
23
27
1.88
13652--13728
37
2.1
37
90
4
120
59
11
15
12
1.61
19534--19591
27
2.2
26
90
3
89
24
36
5
34
1.78
22743--22772
6
5.0
6
100
0
60
0
66
16
16
1.25
26727--26860
67
2.0
67
98
0
259
29
29
11
29
1.91
30757--30820
21
3.1
21
73
8
69
34
21
7
35
1.83
35852--35938
16
5.5
16
88
2
131
10
13
35
40
1.79
35898--35983
6
13.5
6
71
20
50
3
19
43
33
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35852--35938
31
2.8
32
91
1
140
10
13
35
40
1.79
35852--35958
48
2.2
48
83
3
126
9
14
37
38
1.79
35929--35983
23
2.4
23
90
0
83
1
23
45
29
1.63
36714--36789
6
11.8
6
71
27
50
3
17
47
31
1.66
46187--46224
18
2.0
20
90
10
62
42
5
26
26
1.76

Tables:   1

The End!