genome.fa.s7742.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007742.1 Corchorus capsularis cultivar CVL-1 contig07763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62251

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784--816	14	2.4	14	100	0	66	42	0	6	51	1.26
1434--1504	7	10.3	7	73	14	67	38	0	1	60	1.06
1462--1496	11	3.3	11	84	8	54	31	0	0	68	0.90
1435--1503	11	6.4	10	72	18	50	36	0	1	62	1.04
1436--1512	37	2.1	37	85	4	102	36	1	1	61	1.13
1554--1625	33	2.2	33	88	9	105	31	0	8	59	1.27
1435--1591	45	3.5	44	70	14	113	36	0	5	57	1.27
1566--1642	33	2.2	34	86	11	104	35	0	7	57	1.28
1751--1791	7	5.9	7	78	21	50	43	2	0	53	1.13
1761--1790	16	1.9	15	93	6	51	40	3	0	56	1.16
3765--3827	16	3.9	16	81	8	74	33	39	19	7	1.80
4679--4721	16	2.7	16	81	0	50	34	30	18	16	1.93
8533--8584	24	2.3	24	81	18	67	53	0	0	46	1.00
14794--14828	2	17.0	2	94	5	61	48	0	2	48	1.16
17983--18030	11	4.4	11	86	7	53	41	2	2	54	1.24
19209--19268	31	2.0	31	83	3	77	41	13	6	38	1.70
19455--19518	23	2.8	23	74	11	60	3	28	0	68	1.04
20727--20759	14	2.4	14	95	5	59	54	0	0	45	0.99
21988--22175	94	2.0	94	93	2	324	37	11	14	37	1.82
22457--22983	271	1.9	271	95	0	946	33	19	17	29	1.95
28934--28967	2	17.0	2	100	0	68	50	0	0	50	1.00
33633--33717	41	2.1	41	86	8	120	55	18	10	15	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33933--33987	13	4.2	14	88	11	82	30	0	10	58	1.33
33941--33987	20	2.4	20	96	3	87	29	0	12	57	1.36
34687--34899	106	2.0	106	97	0	399	34	6	16	42	1.73
37403--37585	61	3.0	61	100	0	366	29	13	22	34	1.92
39866--39943	38	2.1	38	97	0	147	43	10	17	28	1.82
40127--40152	7	3.7	7	100	0	52	42	57	0	0	0.98
41884--41964	29	2.7	29	86	3	99	27	23	12	37	1.90
42948--42973	4	6.5	4	100	0	52	0	23	0	76	0.78
45896--45931	2	18.0	2	100	0	72	50	0	0	50	1.00
46122--46216	44	2.2	45	90	3	149	17	2	46	33	1.60
49989--50042	21	2.6	21	87	0	81	38	14	0	46	1.45
49995--50127	56	2.4	56	84	2	169	38	15	6	40	1.71
50057--50097	21	2.0	21	85	0	55	39	14	4	41	1.67
50079--50170	43	2.1	43	87	0	130	38	15	7	39	1.76
50092--50460	142	2.6	140	90	6	516	37	17	6	38	1.76
50183--50313	43	3.0	43	95	0	244	37	19	6	36	1.78
50023--50448	99	4.4	100	77	14	374	37	17	6	38	1.77
50304--50351	21	2.5	18	83	10	60	43	20	0	35	1.52
50325--50509	43	4.3	43	95	0	327	36	18	7	37	1.78
54687--54715	1	29.0	1	100	0	58	0	0	0	100	0.00
55131--55487	90	4.0	90	86	2	459	31	27	17	24	1.97
55133--55476	181	1.9	179	87	2	501	31	26	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55608--55674	35	1.9	35	87	0	98	28	28	17	25	1.98
55745--55849	54	1.9	55	88	1	158	35	19	14	31	1.91
57024--57073	18	2.8	18	85	11	59	2	18	0	80	0.82
57648--57705	17	3.2	17	77	17	64	0	20	0	79	0.74
57648--57703	20	2.8	20	77	17	62	0	21	0	78	0.75
57648--57705	16	3.7	15	80	15	64	0	20	0	79	0.74
57648--57706	24	2.4	26	83	13	81	0	22	0	77	0.76
58360--58411	14	3.9	13	76	11	52	34	15	7	42	1.75
61130--61263	69	2.0	68	82	5	166	35	14	8	41	1.77
61189--61242	21	2.6	21	87	0	81	38	14	0	46	1.45
61223--61314	43	2.1	43	87	0	139	36	18	7	36	1.79
61204--61413	99	2.1	99	91	0	339	36	19	6	37	1.78
61326--61415	43	2.1	43	95	0	162	36	21	7	34	1.82

Tables:   1

The End!