Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007747.1 Corchorus capsularis cultivar CVL-1 contig07768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4287
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:2364 original size:15 final size:16

Alignment explanation


    Indices: 2344--2377  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       2334 GATTGCTCTC

                         *  
       2344 TTAGTT-GATTTACTT
          1 TTAGTTAGATTTAATT

                            
       2359 TTAGTTAGATTTAATT
          1 TTAGTTAGATTTAATT

               
       2375 TTA
          1 TTA

       2378 ATTCTTCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    6  0.35
  16   11  0.65

ACGTcount: A:0.26, C:0.03, G:0.12, T:0.59


Consensus pattern (16 bp):   
TTAGTTAGATTTAATT

Done.