Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007751.1 Corchorus capsularis cultivar CVL-1 contig07772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27076

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3938--4268
166
2.0
167
85
2
443
30
13
16
39
1.87
4911--5099
95
2.0
92
88
3
279
44
10
5
40
1.61
8553--8589
13
2.8
13
87
0
56
16
43
8
32
1.77
10038--11115
545
2.0
531
95
2
1949
49
10
10
28
1.71
11167--11302
68
2.0
68
95
0
245
45
6
14
33
1.71
13454--13504
21
2.5
20
75
9
57
35
11
9
43
1.75
18612--18668
28
2.0
28
100
0
114
38
10
10
40
1.74
19705--19765
22
2.8
21
73
9
59
26
16
8
49
1.73
20703--20742
20
2.0
21
90
5
64
27
5
10
57
1.52
20780--20818
20
2.0
20
89
0
60
35
7
7
48
1.61
22919--22977
24
2.7
22
82
12
68
59
10
8
22
1.56
24572--24617
23
2.0
23
95
0
83
13
32
21
32
1.92
24614--24656
22
2.0
22
86
4
61
51
32
0
16
1.45
25642--25705
30
2.1
30
97
0
119
42
6
17
34
1.74
26975--27076
2
51.0
2
100
0
204
50
0
50
0
1.00

Tables:   1

The End!