Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007754.1 Corchorus capsularis cultivar CVL-1 contig07775, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2855
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31


Found at i:127 original size:6 final size:6

Alignment explanation


    Indices: 116--142  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        106 AAAGCAAAGC

                                           
        116 AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAA

        143 ACAAATTAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Done.