Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007756.1 Corchorus capsularis cultivar CVL-1 contig07777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36513

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4125--4154
16
1.9
16
93
6
53
36
3
13
46
1.60
19317--19521
97
2.1
97
87
1
297
23
4
26
44
1.73
21255--21356
34
2.8
37
89
8
165
35
23
15
25
1.94
34635--35212
22
26.6
22
70
12
229
35
15
10
38
1.82
34765--34850
45
1.9
45
80
4
102
37
16
12
33
1.87
34941--35025
23
3.7
23
84
1
100
37
14
7
41
1.73
34922--35025
46
2.3
45
80
9
122
36
14
9
39
1.79
35033--35070
20
2.0
20
84
5
51
23
18
5
52
1.65
35318--35572
44
5.8
44
75
7
187
33
13
9
43
1.77
35338--35506
66
2.6
66
79
2
180
33
11
10
44
1.75
35318--35645
22
14.8
22
71
13
147
33
14
9
41
1.79
35318--35572
22
11.6
22
75
8
153
33
13
9
43
1.77
35403--35572
66
2.5
68
80
11
176
34
14
9
41
1.78
35665--35722
24
2.6
23
76
10
57
36
17
8
37
1.80
35813--35887
22
3.4
22
92
3
116
36
17
12
34
1.87
35765--35920
44
3.5
44
76
8
129
39
18
9
32
1.83
35809--35923
22
5.3
21
80
13
76
38
17
9
34
1.82
36316--36358
19
2.2
20
84
16
54
62
2
6
27
1.33

Tables:   1

The End!