Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007761.1 Corchorus capsularis cultivar CVL-1 contig07782, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94538

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--56
14
2.8
14
80
0
51
79
0
12
7
0.93
131--169
2
19.0
2
94
5
69
48
2
0
48
1.15
289--537
128
1.9
128
83
6
324
29
20
8
40
1.83
586--621
1
36.0
1
100
0
72
100
0
0
0
0.00
2454--2515
16
3.9
16
82
6
63
9
3
30
56
1.47
2464--2512
15
3.2
16
83
13
59
6
2
34
57
1.35
3687--3716
2
15.5
2
93
6
53
46
0
0
53
1.00
3933--3971
19
2.1
19
100
0
78
30
10
28
30
1.90
6439--6500
30
2.0
31
96
3
117
33
24
6
35
1.81
16755--16810
18
3.4
18
68
27
61
35
8
32
23
1.86
16753--16823
30
2.4
30
92
0
124
32
15
30
21
1.94
19661--19695
18
1.9
18
88
0
52
42
8
0
48
1.33
20000--20065
34
1.9
34
93
0
114
45
12
10
31
1.76
23347--23449
15
7.1
15
66
21
58
42
36
11
8
1.72
23190--23557
192
1.9
192
88
1
558
39
34
11
14
1.83
23990--24024
14
2.4
14
90
4
52
2
14
28
54
1.54
26348--26388
21
1.9
22
90
5
66
48
9
0
41
1.36
29970--30022
19
2.8
18
86
8
54
0
22
0
77
0.77
29977--30024
19
2.5
20
80
10
64
0
20
0
79
0.74
29988--30028
20
2.0
20
86
13
57
0
21
0
78
0.76
32943--33097
70
2.2
71
82
7
183
51
0
9
38
1.40
36620--36647
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36931--37029
49
2.0
51
92
4
166
57
10
18
14
1.64
39633--39657
12
2.1
12
100
0
50
44
40
8
8
1.63
41946--41984
3
13.0
3
100
0
78
33
0
0
66
0.92
46331--46385
26
2.1
26
96
0
101
65
5
3
25
1.31
58751--58894
50
2.9
50
93
1
245
22
13
34
29
1.92
70525--70705
99
1.8
99
81
2
229
38
16
15
29
1.90
72677--72707
2
15.5
2
100
0
62
48
0
0
51
1.00
78642--78669
2
14.0
2
100
0
56
50
0
0
50
1.00
92502--92543
13
3.5
12
78
21
52
59
0
0
40
0.97
92958--92995
11
3.5
11
89
10
51
39
0
2
57
1.12
93182--93275
11
8.9
10
69
26
52
58
1
1
39
1.12
93185--93272
14
6.4
14
69
25
55
57
1
1
39
1.13
93160--93257
40
2.4
39
76
18
103
57
1
3
38
1.21

Tables:   1

The End!