Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007768.1 Corchorus capsularis cultivar CVL-1 contig07789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126478

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2478
331
7.7
326
71
13
1205
30
14
18
36
1.91
932--2486
318
4.8
327
78
8
1555
30
14
18
36
1.91
3984--4077
8
11.6
8
68
15
50
39
13
46
0
1.44
4066--4098
10
3.3
10
91
0
57
51
6
39
3
1.42
6046--6255
104
2.0
104
96
0
384
31
28
9
30
1.88
7190--7261
36
2.0
36
86
5
101
11
18
8
62
1.52
24684--24722
20
2.0
20
84
0
51
30
0
7
61
1.24
24860--24930
32
2.2
32
85
5
90
47
12
1
38
1.50
24981--25055
27
2.7
27
83
4
78
45
5
9
40
1.59
34348--34390
8
5.0
8
81
10
50
81
2
16
0
0.79
34351--34387
19
1.9
19
89
10
58
81
2
16
0
0.81
34348--34390
18
2.5
16
79
17
50
81
2
16
0
0.79
41175--41201
2
13.5
2
100
0
54
48
0
0
51
1.00
41686--41714
13
2.1
14
93
6
51
0
13
0
86
0.58
43866--43901
8
4.8
8
96
3
58
27
13
44
13
1.82
43866--43901
15
2.4
14
86
13
54
27
13
44
13
1.82
47695--47721
2
13.5
2
100
0
54
48
0
0
51
1.00
57975--58028
1
54.0
1
96
0
99
98
1
0
0
0.13
62834--62862
2
14.5
2
100
0
58
48
0
0
51
1.00
65209--65237
7
4.3
7
95
4
51
89
10
0
0
0.48
68895--68928
17
2.1
16
88
5
50
52
14
0
32
1.42
81660--81689
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107224--107294
29
2.4
30
85
2
99
46
12
16
23
1.82
116280--116456
31
5.7
31
78
4
151
36
19
21
22
1.95
120753--120792
20
2.0
20
100
0
80
50
20
10
20
1.76
120948--126462
670
8.3
668
89
2
8013
37
14
14
33
1.87
120948--126462
334
16.5
333
88
2
8006
37
14
14
33
1.87

Tables:   1

The End!