Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007769.1 Corchorus capsularis cultivar CVL-1 contig07790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48412

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1376
332
4.1
334
87
4
1912
37
14
14
33
1.87
1129--1625
251
2.0
250
90
1
789
36
13
16
32
1.88
1533--1719
94
2.0
94
93
0
320
39
16
19
25
1.92
3013--3094
12
6.7
12
72
19
53
60
0
14
24
1.34
6048--6091
21
2.1
21
87
8
63
38
20
15
25
1.92
12009--12101
29
3.2
29
82
0
87
45
13
18
22
1.85
14447--14742
165
1.8
161
85
10
420
28
15
14
40
1.87
22775--22859
15
5.7
15
74
0
53
7
44
3
44
1.48
22772--22809
18
2.1
18
90
0
58
2
52
2
42
1.29
26305--26330
13
2.0
13
100
0
52
23
15
7
53
1.67
26396--26439
22
2.0
22
100
0
88
59
18
4
18
1.55
32491--32786
163
1.8
163
89
1
468
35
19
14
30
1.92
34155--34181
2
13.5
2
100
0
54
51
0
0
48
1.00
39665--39716
25
2.1
25
96
0
95
50
17
3
28
1.64
41343--41386
24
1.9
24
86
9
65
54
0
0
45
0.99
42425--42476
19
2.5
20
90
9
79
26
0
17
55
1.42
43222--43349
65
2.0
65
95
0
229
59
10
16
14
1.61

Tables:   1

The End!