Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007770.1 Corchorus capsularis cultivar CVL-1 contig07791, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99915

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1456--1610
78
2.0
78
96
0
283
27
23
20
28
1.99
5959--5996
11
3.5
11
85
10
51
57
2
0
39
1.12
26161--26202
22
1.9
22
100
0
84
38
26
16
19
1.92
26164--26211
22
2.3
20
86
10
62
39
25
16
18
1.91
26183--26281
31
3.2
31
82
0
117
32
27
22
18
1.97
45784--45810
14
1.9
14
100
0
54
11
7
14
66
1.43
56400--56520
61
2.0
60
85
9
165
30
16
14
38
1.89
58035--58084
10
5.6
9
80
15
59
0
10
4
86
0.71
58029--58084
8
6.6
8
79
16
60
0
10
3
85
0.71
58035--58084
18
2.8
18
93
0
82
0
10
4
86
0.71
59633--59733
29
3.4
29
83
4
112
15
30
17
35
1.92
59785--59864
29
2.7
30
79
11
101
36
17
27
18
1.94
60326--60362
15
2.6
14
91
8
58
0
0
8
91
0.41
60317--60360
18
2.4
19
88
11
65
0
0
13
86
0.57
92472--93072
322
1.9
320
80
7
723
33
14
14
36
1.88
93159--94400
328
3.8
325
84
4
1522
36
17
13
32
1.88
95326--95361
18
2.1
17
94
5
63
63
8
16
11
1.49
95956--95993
19
2.1
18
90
5
58
28
21
2
47
1.64
97567--97607
21
2.0
21
85
9
57
43
21
9
24
1.83

Tables:   1

The End!