Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007776.1 Corchorus capsularis cultivar CVL-1 contig07797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58999

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11953--12030
8
9.8
8
91
0
84
35
0
14
50
1.43
11965--12023
4
14.8
4
96
0
91
30
0
18
50
1.47
11950--12027
12
6.5
12
90
0
93
35
0
14
50
1.43
11957--12030
16
4.6
16
91
0
103
35
0
14
50
1.44
12458--12806
173
2.0
174
96
1
637
28
17
19
34
1.94
18990--19033
14
3.1
14
83
3
52
20
11
2
65
1.35
23385--23448
2
32.0
2
79
17
71
48
3
3
45
1.34
28592--28631
14
2.7
14
88
7
53
12
2
35
50
1.54
29167--29199
2
16.5
2
100
0
66
48
0
0
51
1.00
36260--36304
21
2.1
21
87
0
63
17
33
11
37
1.85
36530--36603
32
2.3
32
95
0
130
13
25
44
16
1.84
36773--36801
2
14.5
2
100
0
58
51
0
0
48
1.00
38186--38242
27
2.2
26
82
14
66
31
40
22
5
1.76
43183--43215
5
6.8
5
89
3
50
3
15
0
81
0.80
43183--43221
15
2.6
15
87
0
51
5
12
0
82
0.83
58123--58255
50
2.6
51
80
5
153
37
14
21
26
1.92
58278--58394
50
2.3
51
83
1
146
32
19
22
25
1.97
58485--58695
41
5.2
41
78
5
205
39
16
15
28
1.88
58529--58681
83
1.8
83
87
8
231
40
16
13
29
1.87
58750--58817
30
2.3
29
82
7
93
17
30
16
35
1.92

Tables:   1

The End!