Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007778.1 Corchorus capsularis cultivar CVL-1 contig07799, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115822

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1864
323
5.7
328
81
7
1951
32
14
15
37
1.88
6641--6707
21
2.9
25
72
25
83
11
34
23
29
1.91
6625--6700
21
3.5
21
73
19
75
10
35
22
31
1.88
6711--6858
78
1.9
78
98
0
287
61
12
15
10
1.56
7289--7327
19
2.1
19
100
0
78
38
15
0
46
1.46
13608--13633
1
26.0
1
100
0
52
0
0
0
100
0.00
23007--23035
2
15.0
2
92
7
51
51
0
0
48
1.00
23394--23432
5
7.4
5
85
8
51
84
0
15
0
0.62
23394--23432
11
3.6
11
89
6
62
84
0
15
0
0.62
26412--26444
3
11.0
3
100
0
66
66
0
0
33
0.92
29461--29497
14
2.8
13
88
8
56
59
0
2
37
1.12
36112--36153
2
21.0
2
100
0
84
50
0
0
50
1.00
48233--48313
30
2.7
30
88
0
126
58
16
17
8
1.62
69129--69174
21
2.2
22
92
7
78
67
13
4
15
1.38
69384--69429
23
1.9
25
86
8
69
10
41
2
45
1.51
74056--74080
6
4.2
6
100
0
50
32
0
16
52
1.44
77869--78185
157
2.0
157
100
0
634
35
15
10
39
1.81
81853--81889
17
2.2
17
95
0
65
10
5
35
48
1.61
81871--81921
25
2.0
25
92
7
86
27
3
33
35
1.75
83719--83909
66
2.9
66
89
5
287
27
9
30
31
1.89
85868--85899
10
3.2
10
95
0
55
87
0
12
0
0.54
105799--105831
13
2.6
13
95
4
59
63
9
21
6
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109211--109245
2
17.5
2
100
0
70
48
0
0
51
1.00
112132--112160
15
1.9
15
100
0
58
34
20
10
34
1.87
113123--115820
333
8.1
330
86
4
3468
32
15
16
35
1.90
114004--114029
12
2.2
12
100
0
52
30
0
15
53
1.42

Tables:   1

The End!